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PApaperclipai/paperclip101k2,948 new stars in the last 7 days
Computational biology and genomics analysis pipelines. GENERAL: not locked to any specific tool — use Scanpy, Seurat, DESeq2, or any appropriate package.
| Format | Content | Tools |
|---|---|---|
| FASTQ | Raw sequencing reads | FastQC, Trimmomatic |
| BAM/SAM | Aligned reads | samtools, IGV |
| VCF | Variant calls | bcftools, GATK |
| h5ad | AnnData (scRNA-seq) | Scanpy |
| RDS | R object | Seurat, DESeq2 |
| BED | Genomic regions | bedtools |
PApaperclipai/paperclip101k2,948 new stars in the last 7 days
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